Hector,
I have had this problem and Hostgator did a good job of cleaning it up for me. Some hosts will run the scan, but it doesn't always clear the infected file. I was satisfied that Hostgator did a good job, though.
Hope you get this worked out. I is a major irritation. I just reviewed a company called Incapsula, that lets you use a proxy server that intercepts these kinds of attacks. They don't fix them, they just keep them from getting to the server. You might consider
incapsula.com if you have persistent problems.
Good Luck,
Ed